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PostPosted: Mon Apr 08, 2019 12:45 am 
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Joined: Mon Jun 04, 2018 12:44 am
Posts: 6
Hi galprop group:
I have installed all the dependency package, then i followed the steps:
step1:
Code:
autoreconf -i -v -f


step:2
Code:
./configure  F77=ifort CXX=g++ --with-healpix=/home/congyanping/Software/healpix/Healpix_311/src/cxx/generic_gcc  --prefix=/home/congyanping/Software/galprop  --with-galdef=/home/congyanping/Software/galprop/GALDEF --with-fitsdata=/home/congyanping/Software/galprop/fitsdata --datadir=/home/congyanping/Software/galprop/fortran_datadir  --enable-openmp


Quote:
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether we are using the GNU Fortran 77 compiler... no
checking whether ifort accepts -g... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ifort option to produce PIC... -fPIC
checking if ifort PIC flag -fPIC works... no
checking if ifort static flag -static works... no
checking if ifort supports -c -o file.o... no
checking if ifort supports -c -o file.o... (cached) no
checking whether the ifort linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for pid_t... yes
checking for size_t... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking size of void*... 8
checking for uint32_t... yes
checking for uint64_t... yes
checking size of unsigned int... 4
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking whether gcc needs -traditional... no
checking whether lstat correctly handles trailing slash... yes
checking whether stat accepts an empty string... no
checking for log... no
checking for exp... no
checking for pow... no
checking for sqrt... no
checking whether the compiler accepts the __m128d type... yes
configure: Architecture specific code:
***************************
This is a x86_64 processor:
vectorial code: yes
***************************
configure: Using CXXFLAGS="-g -pipe -O3 -Wall"
configure: Using FFLAGS="-g -O3 -xhost -no-ipo -parallel -gcc -Wall"
checking how to get verbose linking output from ifort... configure: WARNING: compilation failed

checking for Fortran 77 libraries of ifort...
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... configure: error: in `/home/congyanping/Software/galprop':
configure: error: cannot compile a simple Fortran program
See `config.log' for more details


Code:
make

Quote:
In file included from /usr/include/c++/7/iostream:39:0,
from Distribution.h:13,
from galprop_classes.h:12,
from read_gcr.cc:6:
/usr/include/c++/7/ostream:502:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, char)
operator<<(basic_ostream<_CharT, _Traits>& __out, char __c)
^~~~~~~~
/usr/include/c++/7/ostream:502:5: note: template argument deduction/substitution failed:
read_gcr.cc:60:47: note: cannot convert ‘infile’ (type ‘std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}’) to type ‘char’
cout<<" reading nuclei array from file "<<infile<<endl;
^~~~~~
In file included from /usr/include/c++/7/iostream:39:0,
from Distribution.h:13,
from galprop_classes.h:12,
from read_gcr.cc:6:
/usr/include/c++/7/ostream:497:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, _CharT)
operator<<(basic_ostream<_CharT, _Traits>& __out, _CharT __c)
^~~~~~~~
/usr/include/c++/7/ostream:497:5: note: template argument deduction/substitution failed:
read_gcr.cc:60:47: note: deduced conflicting types for parameter ‘_CharT’ (‘char’ and ‘std::__cxx11::basic_ostringstream<char>’)
cout<<" reading nuclei array from file "<<infile<<endl;
^~~~~~
In file included from /usr/include/c++/7/bits/ios_base.h:46:0,
from /usr/include/c++/7/ios:42,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from Distribution.h:13,
from galprop_classes.h:12,
from read_gcr.cc:6:
/usr/include/c++/7/system_error:217:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const std::error_code&)
operator<<(basic_ostream<_CharT, _Traits>& __os, const error_code& __e)
^~~~~~~~
/usr/include/c++/7/system_error:217:5: note: template argument deduction/substitution failed:
read_gcr.cc:60:47: note: cannot convert ‘infile’ (type ‘std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}’) to type ‘const std::error_code&’
cout<<" reading nuclei array from file "<<infile<<endl;
^~~~~~
In file included from /usr/include/c++/7/string:52:0,
from Configure.h:9,
from galprop_classes.h:9,
from read_gcr.cc:6:
/usr/include/c++/7/bits/basic_string.h:6275:5: note: candidate: template<class _CharT, class _Traits, class _Alloc> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&)
operator<<(basic_ostream<_CharT, _Traits>& __os,
^~~~~~~~
/usr/include/c++/7/bits/basic_string.h:6275:5: note: template argument deduction/substitution failed:
read_gcr.cc:60:47: note: ‘std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}’ is not derived from ‘const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>’
cout<<" reading nuclei array from file "<<infile<<endl;
^~~~~~
read_gcr.cc:25:15: warning: unused variable ‘ii’ [-Wunused-variable]
int status, ii, jj;
^~
read_gcr.cc:25:19: warning: unused variable ‘jj’ [-Wunused-variable]
int status, ii, jj;
^~
read_gcr.cc:26:43: warning: unused variable ‘exposure’ [-Wunused-variable]
long fpixel = 1, naxis = 4, nelements, exposure;
^~~~~~~~
Makefile:1066: recipe for target 'read_gcr.o' failed
make[2]: *** [read_gcr.o] Error 1
make[2]: leave the directory“/home/congyanping/Software/galprop/source”
Makefile:734: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: leave the directory“/home/congyanping/Software/galprop”
Makefile:594: recipe for target 'all' failed
make: *** [all] Error 2


any help would be appreciated
sincerely
YP


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