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PostPosted: Thu Jul 19, 2012 1:21 pm 
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Joined: Mon Jun 04, 2012 8:39 pm
Posts: 2
I installed the dependencies, cfitsio, CCfits, CLHEP, gsl and Healpix.
Then I went into galprop and ran
./configure.

That went fine.
On running make, I get the following error. Seems like it does not recognize some lines in the main galpropMain.cc file.
I'd appreciate any ideas on how to get around this. thanks:


/home/arjunsharma/gal1/galprop-54.1.984/source/galpropMain.cc:99: undefined reference to `Galprop::~Galprop()'
/home/arjunsharma/gal1/galprop-54.1.984/source/galpropMain.cc:92: undefined reference to `utl::ErrorLogger::Log(utl::ErrorLogger::SeverityLevel, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, utl::ErrorLogger::VerbosityLevel) const'
collect2: ld returned 1 exit status
make[2]: *** [galprop] Error 1
make[2]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984/source'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984'
make: *** [all] Error 2


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PostPosted: Sun Jul 22, 2012 8:51 pm 
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Joined: Mon Jun 04, 2012 8:39 pm
Posts: 2
On running make again, I am getting the following error:


/home/arjunsharma/Healpix_2.20a/src/cxx/generic_gcc/lib/libcxxsupport.a(cxxutils.o): In function `openmp_max_threads':
/home/arjunsharma/Healpix_2.20a/src/cxx/cxxsupport/openmp_support.h:51: undefined reference to `omp_get_max_threads'
collect2: ld returned 1 exit status
make[2]: *** [galprop] Error 1
make[2]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984/source'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984'
make: *** [all] Error 2


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PostPosted: Thu Nov 01, 2012 4:46 am 
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Joined: Tue Oct 30, 2012 7:06 am
Posts: 4
Add "--enable-openmp" after "./configure" commond.


arjunsharma wrote:
On running make again, I am getting the following error:


/home/arjunsharma/Healpix_2.20a/src/cxx/generic_gcc/lib/libcxxsupport.a(cxxutils.o): In function `openmp_max_threads':
/home/arjunsharma/Healpix_2.20a/src/cxx/cxxsupport/openmp_support.h:51: undefined reference to `omp_get_max_threads'
collect2: ld returned 1 exit status
make[2]: *** [galprop] Error 1
make[2]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984/source'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/arjunsharma/gal1/galprop-54.1.984'
make: *** [all] Error 2

_________________
Best,
Xiang Li
===========================
Purple Moutain Observatory, CAS
Nanjing, P.R.China
===========================


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PostPosted: Fri Jul 26, 2013 12:08 am 
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Joined: Sun Jul 07, 2013 8:48 am
Posts: 8
did you just run: ./configure ? nothing else?


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PostPosted: Fri Jul 26, 2013 10:33 am 
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Joined: Wed Oct 21, 2009 6:30 pm
Posts: 47
Location: Stanford U.
The issues like reported above can be caused by installing all dependencies (Healpix, cfitsio, CLHEP, etc.) into the same directory (e.g., /usr/local).
To be safe, install all the dependencies into individual directories. This can be done by using the argument "--prefix=/path/to/package" when running "configure" for the dependencies.
After that, run "make" and "make install" for every dependency, so that the dependent library is installed into /path/to/package.
Then, when you run "configure" for GALPROP, use "--with-package=/path/to/package". You will need one of each for every dependency.
Run "./configure --help" to see the list of all packages.
The comment by lx9507 about "--enable-openmp" is correct, you need this flag to enable multi-threading in GALPROP.

_________________
Andrey Vladimirov
http://galprop.stanford.edu/


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